In the screen below, I've already copied some legal text from a random PDF file online and I've setup CuteMarkEd above and LibreOffice (with paragraph markings) below:

How it works:
CuteMarkEd doesn't recognize standard end-of-line values unless there's two in a row. This allows the program to quickly and easily break down bad line wraps but preserve paragraph breaks. Unfortunately you have to select ALL the text, right-click., and then copy. CTRL+C doesn't work.
I've tried several different systems, which I can detail here if anyone is curious, but this one is the fastest.
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EDIT: I realized shortly after posting that ghostwriter has similar functionality and probably works better. See smaragdus' review of ghostwriter.